*Both authors contributed equally to this work.
#Undergraduate student author.

  1. Qiu Y, Nerenberg PS, Head-Gordon T, and Wang L-P. Systematic Optimization of Water Models Using Liquid/Vapor Surface Tension Data. Journal of Physical Chemistry B 2019; 123:7061-7073. [DOI]

  2. Nerenberg PS and Head-Gordon T. New developments in force fields for biomolecular simulations. Current Opinion in Structural Biology 2018; 49:129-139. [DOI]

  3. Li N, Menezes GB, Allen EL, and Nerenberg PS. First-Year Experience (FYrE@ECST): Intro to Physics Course (WIP). ASEE CoNECD Conference 2018. [link]

  4. Yedvabny E, Nerenberg PS, So C#, and Head-Gordon T. Disordered Structural Ensembles of Vasopressin and Oxytocin and Their Mutants. Journal of Physical Chemistry B 2015; 119:896-905. [DOI]

  5. Chapman DE#*, Steck JK#*, and Nerenberg PS. Optimizing Protein-Protein van der Waals Interactions for the AMBER ff9x/ff12 Force Field. Journal of Chemical Theory and Computation 2014; 10:273-281. [DOI]

  6. Liguori N, Nerenberg PS, and Head-Gordon T. Embedding Aβ42 in Heterogenous Membranes Depends on Cholesterol Asymmetries. Biophysical Journal 2013; 105:899-910. [DOI]

  7. Nerenberg PS, Jo B#, So C#, Tripathy A#, and Head-Gordon T. Optimizing solute-water van der Waals interactions to reproduce solvation free energies. Journal of Physical Chemistry B 2012; 116:4524-4534. [DOI]

  8. Ball KA, Phillips AH, Nerenberg PS, Fawzi NL, Wemmer DE, and Head-Gordon T. Homogeneous and Heterogeneous Tertiary Structure Ensembles of Amyloid-β Peptides. Biochemistry 2011; 50:7612-7628. [DOI]

  9. Nerenberg PS and Head-Gordon T. Optimizing Protein-Solvent Force Fields to Reproduce Intrinsic Conformational Preferences of Model Peptides. Journal of Chemical Theory and Computation 2011; 7:1220-1230. [DOI]

  10. Chen MM, Bartlett AI, Nerenberg PS, Friel CT, Hackenberger CPR, Stultz CM, Radford SE, and Imperiali B. Perturbing the folding energy landscape of the bacterial immunity protein Im7 by site-specific N-linked glycosylation. Proceedings of the National Academy of Sciences 2010; 107:22528-22533. [DOI]

  11. Salsas-Escat R*, Nerenberg PS*, and Stultz CM. Cleavage site specificity and conformational selection in type I collagen degradation. Biochemistry 2010; 49:4147-4158. [DOI]

  12. Gurry T, Nerenberg PS, and Stultz CM. The contribution of interchain salt bridges to triple helical stability in collagen. Biophysical Journal 2010; 98:2634-2643. [DOI]

  13. Phillips CM, Nerenberg PS, Drennan CL, and Stultz CM. The Physical Basis of Metal Binding Specificity in E. coli NikR. Journal of the American Chemical Society 2009; 131:10220-10228. [DOI]

  14. Nerenberg PS and Stultz CM. Differential Unfolding of α1 and α2 Chains in Type I Collagen and Collagenolysis. Journal of Molecular Biology 2008; 382:246-256. [DOI]

  15. Nerenberg PS, Salsas-Escat R, Stultz CM. Do collagenases unwind triple-helical collagen prior to peptide bond hydrolysis? Reinterpreting experimental observations with mathematical models. Proteins 2008; 70:1154-1161. [DOI]

  16. Nerenberg PS, Salsas-Escat R, Stultz CM. Collagen – A Necessary Accomplice in the Metastatic Process. Cancer Genomics and Proteomics 2007; 4:319-328. [Link]